BEDMatrix - Extract Genotypes from a PLINK .bed File
A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
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bedgeneticsgenomicsplinkplink2r-pkg
7.41 score 19 stars 10 dependents 298 scripts 995 downloadsBGData - A Suite of Packages for Analysis of Big Genomic Data
An umbrella package providing a phenotype/genotype data structure and scalable and efficient computational methods for large genomic datasets in combination with several other packages: 'BEDMatrix', 'LinkedMatrix', and 'symDMatrix'.
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geneticsgenomicsgwasr-pkgopenmp
5.45 score 34 stars 55 scripts 334 downloadsLinkedMatrix - Column-Linked and Row-Linked Matrices
A class that links matrix-like objects (nodes) by rows or by columns while behaving similarly to a base R matrix. Very large matrices are supported if the nodes are file-backed matrices.
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r-pkg
3.92 score 2 stars 2 dependents 14 scripts 287 downloadssymDMatrix - Partitioned Symmetric Matrices
A matrix-like class to represent a symmetric matrix partitioned into file-backed blocks.
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geneticsgenomicsr-pkg
3.48 score 2 stars 1 dependents 6 scripts 341 downloads