BEDMatrix - Extract Genotypes from a PLINK .bed File
A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
Last updated 5 months ago
bedgeneticsgenomicsplinkplink2r-pkg
7.07 score 18 stars 6 dependents 196 scripts 1.2k downloadsBGData - A Suite of Packages for Analysis of Big Genomic Data
An umbrella package providing a phenotype/genotype data structure and scalable and efficient computational methods for large genomic datasets in combination with several other packages: 'BEDMatrix', 'LinkedMatrix', and 'symDMatrix'.
Last updated 12 days ago
geneticsgenomicsgwasr-pkgopenmp
5.34 score 34 stars 43 scripts 388 downloadsLinkedMatrix - Column-Linked and Row-Linked Matrices
A class that links matrix-like objects (nodes) by rows or by columns while behaving similarly to a base R matrix. Very large matrices are supported if the nodes are file-backed matrices.
Last updated 5 years ago
r-pkg
3.92 score 2 stars 2 dependents 14 scripts 382 downloadssymDMatrix - Partitioned Symmetric Matrices
A matrix-like class to represent a symmetric matrix partitioned into file-backed blocks.
Last updated 5 years ago
geneticsgenomicsr-pkg
3.48 score 2 stars 1 dependents 6 scripts 298 downloads