Package: BEDMatrix 2.0.4
Alexander Grueneberg
BEDMatrix: Extract Genotypes from a PLINK .bed File
A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
Authors:
BEDMatrix_2.0.4.tar.gz
BEDMatrix_2.0.4.zip(r-4.7)BEDMatrix_2.0.4.zip(r-4.6)BEDMatrix_2.0.4.zip(r-4.5)
BEDMatrix_2.0.4.tgz(r-4.6-x86_64)BEDMatrix_2.0.4.tgz(r-4.6-arm64)BEDMatrix_2.0.4.tgz(r-4.5-x86_64)BEDMatrix_2.0.4.tgz(r-4.5-arm64)
BEDMatrix_2.0.4.tar.gz(r-4.7-arm64)BEDMatrix_2.0.4.tar.gz(r-4.7-x86_64)BEDMatrix_2.0.4.tar.gz(r-4.6-arm64)BEDMatrix_2.0.4.tar.gz(r-4.6-x86_64)
BEDMatrix_2.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BEDMatrix/json (API)
NEWS
| # Install 'BEDMatrix' in R: |
| install.packages('BEDMatrix', repos = c('https://quantgen.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/quantgen/bedmatrix/issues
bedgeneticsgenomicsplinkplink2r-pkg
Last updated from:bfd3842231. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 103 | ||
| linux-devel-x86_64 | OK | 98 | ||
| source / vignettes | OK | 155 | ||
| linux-release-arm64 | OK | 99 | ||
| linux-release-x86_64 | OK | 101 | ||
| macos-release-arm64 | OK | 126 | ||
| macos-release-x86_64 | OK | 217 | ||
| macos-oldrel-arm64 | OK | 118 | ||
| macos-oldrel-x86_64 | OK | 190 | ||
| windows-devel | OK | 100 | ||
| windows-release | OK | 62 | ||
| windows-oldrel | OK | 69 | ||
| wasm-release | OK | 90 |
Dependencies:crochet
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A Package to Extract Genotypes from a PLINK .bed File | BEDMatrix-package |
| Create a BEDMatrix Object from a PLINK .bed File | BEDMatrix |
| A Class to Extract Genotypes from a PLINK .bed File | BEDMatrix-class show,BEDMatrix-method |