Package: BEDMatrix 2.0.4
Alexander Grueneberg
BEDMatrix: Extract Genotypes from a PLINK .bed File
A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
Authors:
BEDMatrix_2.0.4.tar.gz
BEDMatrix_2.0.4.zip(r-4.5)BEDMatrix_2.0.4.zip(r-4.4)BEDMatrix_2.0.4.zip(r-4.3)
BEDMatrix_2.0.4.tgz(r-4.4-x86_64)BEDMatrix_2.0.4.tgz(r-4.4-arm64)BEDMatrix_2.0.4.tgz(r-4.3-x86_64)BEDMatrix_2.0.4.tgz(r-4.3-arm64)
BEDMatrix_2.0.4.tar.gz(r-4.5-noble)BEDMatrix_2.0.4.tar.gz(r-4.4-noble)
BEDMatrix_2.0.4.tgz(r-4.4-emscripten)BEDMatrix_2.0.4.tgz(r-4.3-emscripten)
BEDMatrix.pdf |BEDMatrix.html✨
BEDMatrix/json (API)
NEWS
| # Install 'BEDMatrix' in R: |
| install.packages('BEDMatrix', repos = c('https://quantgen.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/quantgen/bedmatrix/issues
bedgeneticsgenomicsplinkplink2r-pkg
Last updated 3 months agofrom:bfd3842231. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 05 2024 |
| R-4.5-win-x86_64 | OK | Nov 05 2024 |
| R-4.5-linux-x86_64 | OK | Nov 05 2024 |
| R-4.4-win-x86_64 | OK | Nov 05 2024 |
| R-4.4-mac-x86_64 | OK | Nov 05 2024 |
| R-4.4-mac-aarch64 | OK | Nov 05 2024 |
| R-4.3-win-x86_64 | OK | Nov 05 2024 |
| R-4.3-mac-x86_64 | OK | Nov 05 2024 |
| R-4.3-mac-aarch64 | OK | Nov 05 2024 |
Dependencies:crochet
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A Package to Extract Genotypes from a PLINK .bed File | BEDMatrix-package |
| Create a BEDMatrix Object from a PLINK .bed File | BEDMatrix |
| A Class to Extract Genotypes from a PLINK .bed File | BEDMatrix-class show,BEDMatrix-method |