Package: BGData 2.4.1

Alexander Grueneberg

BGData: A Suite of Packages for Analysis of Big Genomic Data

An umbrella package providing a phenotype/genotype data structure and scalable and efficient computational methods for large genomic datasets in combination with several other packages: 'BEDMatrix', 'LinkedMatrix', and 'symDMatrix'.

Authors:Gustavo de los Campos [aut], Alexander Grueneberg [aut, cre], Paulino Perez [ctb], Ana Vazquez [ctb]

BGData_2.4.1.tar.gz
BGData_2.4.1.zip(r-4.5)BGData_2.4.1.zip(r-4.4)BGData_2.4.1.zip(r-4.3)
BGData_2.4.1.tgz(r-4.4-x86_64)BGData_2.4.1.tgz(r-4.4-arm64)BGData_2.4.1.tgz(r-4.3-x86_64)BGData_2.4.1.tgz(r-4.3-arm64)
BGData_2.4.1.tar.gz(r-4.5-noble)BGData_2.4.1.tar.gz(r-4.4-noble)
BGData_2.4.1.tgz(r-4.4-emscripten)BGData_2.4.1.tgz(r-4.3-emscripten)
BGData.pdf |BGData.html
BGData/json (API)
NEWS

# Install 'BGData' in R:
install.packages('BGData', repos = c('https://quantgen.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/quantgen/bgdata/issues

Uses libs:
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

geneticsgenomicsgwasr-pkg

5.34 score 34 stars 43 scripts 379 downloads 3 mentions 23 exports 12 dependencies

Last updated 1 years agofrom:fc1cda1987. Checks:OK: 1 ERROR: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 13 2024
R-4.5-win-x86_64ERROROct 13 2024
R-4.5-linux-x86_64ERROROct 13 2024
R-4.4-win-x86_64ERROROct 13 2024
R-4.4-mac-x86_64ERROROct 13 2024
R-4.4-mac-aarch64ERROROct 13 2024
R-4.3-win-x86_64ERROROct 13 2024
R-4.3-mac-x86_64ERROROct 13 2024
R-4.3-mac-aarch64ERROROct 13 2024

Exports:as.BGDataBGDatachunkedApplychunkedMapfindRelatedFWDgenogeno<-getGgetG_symDMatrixGWASload.BGDatamapmap<-orderedMergephenopheno<-preprocessreadRAWreadRAW_big.matrixreadRAW_matrixsegmentssummarize

Dependencies:BEDMatrixBHbigmemorybigmemory.sribitcrochetffLinkedMatrixRcppsymDMatrixsynchronicityuuid

Readme and manuals