{ "_id": "6ac5fe60f511ae58c09a4720", "Package": "BEDMatrix", "Version": "2.0.4", "License": "MIT + file LICENSE", "Title": "Extract Genotypes from a PLINK .bed File", "Description": "A matrix-like data structure that allows for efficient,\nconvenient, and scalable subsetting of binary\ngenotype/phenotype files generated by PLINK\n(), the whole genome\nassociation analysis toolset, without loading the entire file\ninto memory.", "Authors@R": "c(\nperson(\"Alexander\", \"Grueneberg\", email = \"cran@agrueneberg.info\", role = c(\"aut\", \"cre\")),\nperson(\"Gustavo\", \"de los Campos\", email = \"gustavoc@msu.edu\", role = c(\"ctb\")))", "URL": "https://github.com/QuantGen/BEDMatrix", "BugReports": "https://github.com/QuantGen/BEDMatrix/issues", "Repository": "https://quantgen.r-universe.dev", "Date/Publication": "2024-09-06 18:42:54 UTC", "RemoteUrl": "https://github.com/quantgen/bedmatrix", "RemoteRef": "HEAD", "RemoteSha": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-07 08:03:12 UTC", "User": "root" }, "Author": "Alexander Grueneberg [aut, cre],\nGustavo de los Campos [ctb]", "Maintainer": "Alexander Grueneberg ", "_user": "quantgen", "_type": "src", "_file": "BEDMatrix_2.0.4.tar.gz", "_fileid": "https://r2.ropensci.org/351022a5d316c7b7bd96148e2a078516340417ac9a8b751793c52c139d72a3ff", "_filesize": 152436, "_sha256": "351022a5d316c7b7bd96148e2a078516340417ac9a8b751793c52c139d72a3ff", "_expires": "2027-01-15T08:10:06.000Z", "_created": "2026-10-07T08:03:12.000Z", "_published": "2026-10-07T08:10:07.988Z", "_buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 112693013641, "time": 89, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11468767324" }, { "job": 112693013448, "time": 92, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11469175944" }, { "job": 112693013536, "time": 81, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11469256493" }, { "job": 112693013380, "time": 92, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11469215716" }, { "job": 112693013417, "time": 94, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11468387417" }, { "job": 112693013400, "time": 156, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11468857276" }, { "job": 112693013474, "time": 121, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11468547086" }, { "job": 112693013486, "time": 159, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11469410941" }, { "job": 112692162223, "time": 140, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11469095849" }, { "job": 112693013255, "time": 76, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11468546956" }, { "job": 112693013482, "time": 369, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "11468467873" }, { "job": 112693013522, "time": 111, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11469136098" }, { "job": 112693013714, "time": 71, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11468777270" }, { "job": 112693013792, "time": 314, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11468254757" }, { "job": 112693013397, "time": 67, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11468686801" } ], "_upstream": "https://github.com/quantgen/bedmatrix", "_commit": { "id": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "author": "Alexander Grueneberg ", "committer": "Alexander Grueneberg ", "message": "Replace citEntry with bibentry\n", "time": 1725648174 }, "_maintainer": { "name": "Alexander Grueneberg", "email": "cran@agrueneberg.info" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "crochet", "version": ">= 2.3.0", "role": "Imports" }, { "package": "data.table", "role": "Suggests" }, { "package": "LinkedMatrix", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "quantgen", "_selfowned": true, "_usedby": 9, "_updates": [], "_tags": [], "_topics": [ "bed", "genetics", "genomics", "plink", "plink2", "r-pkg" ], "_stars": 18, "_contributors": [ { "user": "agrueneberg", "count": 434, "uuid": 527708 } ], "_userbio": { "uuid": 11443138, "type": "organization", "name": "QuantGen", "followers": 30 }, "_downloads": { "count": 1175, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BEDMatrix" }, "_mentions": 3, "_devurl": "https://github.com/quantgen/bedmatrix", "_searchresults": 299, "_rbuild": "4.6.1", "_assets": [ "extra/BEDMatrix.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/quantgen/bedmatrix", "_realowner": "quantgen", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2015-11-05" }, { "version": "1.0.1", "date": "2015-11-12" }, { "version": "1.1.0", "date": "2015-11-30" }, { "version": "1.2.0", "date": "2016-03-04" }, { "version": "1.3.0", "date": "2016-09-28" }, { "version": "1.4.0", "date": "2017-05-07" }, { "version": "1.4.1", "date": "2018-08-06" }, { "version": "1.5.0", "date": "2019-04-25" }, { "version": "1.6.1", "date": "2019-06-21" }, { "version": "2.0.1", "date": "2019-12-16" }, { "version": "2.0.2", "date": "2020-03-11" }, { "version": "2.0.3", "date": "2020-07-08" }, { "version": "2.0.4", "date": "2024-09-06" } ], "_exports": [ "BEDMatrix", "show" ], "_help": [ { "page": "BEDMatrix-package", "title": "A Package to Extract Genotypes from a PLINK .bed File", "topics": [ "BEDMatrix-package" ] }, { "page": "BEDMatrix", "title": "Create a BEDMatrix Object from a PLINK .bed File", "topics": [ "BEDMatrix" ] }, { "page": "BEDMatrix-class", "title": "A Class to Extract Genotypes from a PLINK .bed File", "topics": [ "BEDMatrix-class", "show,BEDMatrix-method" ] } ], "_readme": "https://github.com/quantgen/bedmatrix/raw/HEAD/README.md", "_rundeps": [ "crochet" ], "_score": 7.408436583250159, "_indexed": true, "_nocasepkg": "bedmatrix", "_universes": [ "quantgen" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.4", "date": "2026-10-07T08:04:52.000Z", "distro": "resolute", "arch": "aarch64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/17f619718cdba972c0c4405d9a88cde3c09d08b5313d2f83858787b901a78bc5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.7.0", "os": "linux", "version": "2.0.4", "date": "2026-10-07T08:04:49.000Z", "distro": "resolute", "arch": "x86_64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/60b029bbf6509af261c06c7ece406f8ce417678cbfa7c7f30588ed0d6d3f608b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.6.1", "os": "linux", "version": "2.0.4", "date": "2026-10-07T08:04:46.000Z", "distro": "resolute", "arch": "aarch64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/52bc380ba812a3b8e60361b398352b32d4d7c6b585c6a2bcaa3d742be02d2559", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.6.1", "os": "linux", "version": "2.0.4", "date": "2026-10-07T08:04:55.000Z", "distro": "resolute", "arch": "x86_64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/e030971eea71785033d75d35f6568747d845d08248c5d51adce4c266a20d0cac", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.5.3", "os": "mac", "version": "2.0.4", "date": "2026-10-07T08:04:55.000Z", "arch": "aarch64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/9e24f42112503d78415117d6a9dfbae72a50dd07c229691d468cfb7c6f04fcde", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.5.3", "os": "mac", "version": "2.0.4", "date": "2026-10-07T08:05:47.000Z", "arch": "x86_64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/96e9f793163824b88d4fb795eddc3a4be8789060192bd1fd37fb643ae99da589", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.6.1", "os": "mac", "version": "2.0.4", "date": "2026-10-07T08:05:15.000Z", "arch": "aarch64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/ea743bc55b17cb3da02b9461adb2b54b89c77e2493b47ede10f41089be905d76", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.6.1", "os": "mac", "version": "2.0.4", "date": "2026-10-07T08:05:45.000Z", "arch": "x86_64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/dbd1a8638cdd69df16ffaf393e642de3dd23134df4642fabf55cf8a73dcee1b5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.4", "date": "2026-10-07T08:04:48.000Z", "arch": "emscripten", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/40f7dfeda53bdbb2ef0e7a3e3fc5c76d6f8b961fcb3598af4b5b8354109b5d12", "status": "success", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.7.0", "os": "win", "version": "2.0.4", "date": "2026-10-07T08:08:56.000Z", "arch": "aarch64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/0b02939791ff6428948935a8fe1a463c1f0f2b55dacf747fd8232282bfed1434", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.7.0", "os": "win", "version": "2.0.4", "date": "2026-10-07T08:04:18.000Z", "arch": "x86_64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/8d86fd45091afd90ceaa13260d94070ef369d2596612ad926feafb30db8e5376", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.5.3", "os": "win", "version": "2.0.4", "date": "2026-10-07T08:04:15.000Z", "arch": "x86_64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/47ac108993dcfca5be10c6a68b6a3f65b6e964a6dc7b413492cd71e9ccfbce50", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.6.1", "os": "win", "version": "2.0.4", "date": "2026-10-07T08:07:52.000Z", "arch": "aarch64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/4ad03e70fd61b777c6ecb4b50eaf93c800c0d47993f99dd8fdad28da6332e1bb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" }, { "r": "4.6.1", "os": "win", "version": "2.0.4", "date": "2026-10-07T08:04:13.000Z", "arch": "x86_64", "commit": "bfd3842231ea4fb525a0f1c13bd7951fb91047ba", "fileid": "https://r2.ropensci.org/7ca57de8400d5e442db3f21eb1a50048841db5e85fa5aa0dbcf2683edeea5fb5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/quantgen/actions/runs/37590944676" } ] }